Fixing Email Configuration Issues in cPanel

By Raman Kumar

Updated on Feb 05, 2025

In this tutorial, we're fixing email configuration issues in cPanel.

Today, email remains one of the most critical tools for communication—both personally and professionally. However, even the most robust email systems can face hiccups that disrupt smooth communication. Whether you’re dealing with emails that aren’t sending or receiving properly, or your messages are ending up in spam folders, misconfigurations and oversights in your email setup could be the culprit.

This tutorial is designed to help you navigate and resolve common email configuration issues using cPanel, a popular web hosting control panel. We’ll walk you through a step-by-step process covering essential areas such as verifying email settings, checking mailbox quotas, and configuring DNS records like SPF, DKIM, and DMARC. By following these practical steps and incorporating the latest best practices, you’ll be able to ensure that your emails are both reliable and secure, enhancing deliverability and maintaining a solid sending reputation.

Fixing Email Configuration Issues in cPanel

Step 1: Verify Your Email Settings in cPanel

Before diving into more technical fixes, ensure that your email accounts are set up correctly:

1. Log into cPanel:

Open your browser and navigate to your cPanel login page. Enter your credentials to access the dashboard.

2. Navigate to Email Accounts:

In the cPanel interface, locate the Email section and click on Email Accounts. This page lists all email accounts associated with your domain.

3. Review Account Details:

For the account experiencing issues, click on Manage (or the equivalent option) to review its settings. Verify the following:

  • Email Address and Password: Ensure they are correct.
  • Server Settings: Confirm that the incoming (IMAP/POP3) and outgoing (SMTP) server names are set as recommended by your hosting provider (commonly in the format mail.yourdomain.com).
  • Port Numbers and Security Protocols: Make sure you are using the correct ports (IMAP typically uses 993 for SSL, POP3 uses 995, and SMTP uses 465 or 587 for secure transmission) and that SSL/TLS is enabled if required.

4. Test Using Webmail:

Access your email through cPanel’s Webmail interface. If messages can be sent and received from Webmail but not from a desktop or mobile client, the issue likely lies in your client’s configuration. Double-check the settings in your email application.

Step 2: Check Mailbox Quotas

Sometimes, email issues arise simply because a mailbox has exceeded its allotted storage space:

1. Locate Quota Information:

Within the Email Accounts section, look for the quota column or a “Manage” option that displays the current usage for each email account.

2. Identify Over-Quota Accounts:

If an account is near or has exceeded its quota, this can prevent new emails from being received. Users may also experience issues sending emails if their mailbox is full.

3. Take Action:

  • Clear Unnecessary Emails: Advise users to delete old or large attachments.
  • Archive Old Emails: Download and archive emails locally before deleting them from the server.
  • Increase Quota: If your hosting plan allows, increase the mailbox quota from within cPanel by editing the email account settings.

Step 3: Configure DNS Records for Optimal Deliverability

Misconfigured DNS records are a common culprit behind sending/receiving issues and emails ending up in spam folders. Focus on setting up SPF, DKIM, and DMARC records:

1. Access the Zone Editor:

In cPanel, navigate to the Domains section and click on Zone Editor. Choose the domain you are troubleshooting.

2. Set Up SPF Records:

Purpose: SPF (Sender Policy Framework) records help recipient servers verify that your email is sent from an authorized server.

How to Configure:

Look for an existing TXT record that starts with v=spf1.

A typical SPF record might look like:

v=spf1 a mx ip4:YOUR.SERVER.IP -all

If you host your email with cPanel and use third-party services, adjust the record to include all authorized IP addresses and domains.

Tip: Use online SPF validation tools to ensure your record is correct.

Configure DKIM (DomainKeys Identified Mail):

Purpose: DKIM adds a digital signature to your emails, verifying that the content hasn’t been tampered with and that it genuinely comes from your domain.

How to Configure:

  • Many cPanel installations offer an Email Deliverability tool that automatically generates DKIM records for you.
  • If not, in the Zone Editor, add a new TXT record with the name provided by your hosting provider (often something like default._domainkey) and paste the DKIM key.

Tip: Confirm that DKIM is enabled by sending a test email to a service like Mail Tester and reviewing the results.

Implement DMARC (Domain-based Message Authentication, Reporting & Conformance):

Purpose: DMARC ties together SPF and DKIM, instructing receiving mail servers on how to handle unauthenticated emails.

How to Configure:

Create a new TXT record in the Zone Editor with the host set to _dmarc.

A basic DMARC record might look like:

v=DMARC1; p=none; rua=mailto:your-email@yourdomain.com

Adjust the policy (p=) to quarantine or reject once you’re confident that your SPF and DKIM settings are working correctly.

Tip: Monitor the reports sent to the email specified in the rua tag to fine-tune your settings.

Step 4: Troubleshooting Sending and Receiving Problems

After verifying settings and DNS records, address potential network and server-related issues:

Review Mail Server Logs:

  • cPanel provides access to mail logs (often accessible via the Metrics section or via SSH for advanced users).
  • Look for error messages that indicate connection failures, authentication errors, or issues with relaying.

Check Firewall and Port Settings:

Ensure that your server’s firewall isn’t blocking essential email ports (25, 465, 587 for SMTP; 993 for IMAP; 995 for POP3).
If you’re on a managed hosting service, contact your provider to confirm that no recent changes have affected email traffic.

Validate Authentication Settings:

For outgoing emails, verify that SMTP authentication is enabled in your email client.
Double-check that you are using the correct username (often the full email address) and password.

Test Connectivity:

Use online tools or command-line utilities (like telnet or openssl s_client) to test connectivity to your mail server’s ports.

Example using OpenSSL:

openssl s_client -connect mail.yourdomain.com:465 -crlf -quiet

A successful connection indicates that the server is accepting secure connections on the specified port.

Step 5: Addressing Emails Marked as Spam

Even with proper configurations, emails can sometimes be flagged as spam. Follow these tips to improve deliverability:

Review Your DNS Records:

  • Ensure SPF, DKIM, and DMARC records are correctly configured (as detailed in Step 3).
  • Use online tools to test and validate your DNS records.

Monitor Email Content:

  • Avoid language or formatting that may trigger spam filters.
  • Include clear subject lines, personalized greetings, and avoid excessive use of images or links.

Maintain a Healthy Sending Reputation:

  • Regularly monitor your domain’s reputation using services like Sender Score.
  • If sending bulk emails, consider using reputable email marketing platforms that comply with best practices and CAN-SPAM regulations.

Whitelist Your Domain:

Ask recipients to add your email address or domain to their safe sender list, especially if they’re frequently marking your emails as spam.

Feedback Loops and Reporting:

Enroll in feedback loop programs offered by major ISPs so that you receive reports when your emails are marked as spam, allowing you to take corrective action.

Final Thoughts

In this tutorial, we fixed email configuration issues in cPanel. By following these steps, you can systematically diagnose and fix common email configuration problems in cPanel. Keeping your email settings, mailbox quotas, and DNS records in order not only helps in resolving sending and receiving issues but also significantly improves your email deliverability and reputation. Remember that changes to DNS records might take some time to propagate, so if you update settings, allow up to 24–48 hours before re-testing deliverability.

With this guide, you now have the knowledge to troubleshoot email errors effectively and ensure your communications reach your recipients without a hitch. Happy emailing!

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